All functions

collapse_counts()

Collapse counts based on multiple categorical metadata columns

compute_hash()

Compute unique hash for each row of data.frame

exprs

Small gene expression matrix

nnzeroGroups()

nnzeroGroups

object_sce

SingleCellExperiment object with fake data

object_seurat

Seurat V3 object with fake data

presto

presto

pseudobulk_deseq2()

Pseudobulk DESeq2

pseudobulk_one_vs_all()

Pseudobulk one versus all

pseudobulk_pairwise()

Pseudobulk pairwise

pseudobulk_within()

Pseudobulk within

rank_matrix()

rank_matrix

sumGroups()

sumGroups

summarize_dge_pairs()

Summarize differential gene expression pairs

top_markers()

Get top n markers from wilcoxauc

top_markers_dds()

Get top n markers from pseudobulk DESeq2

wilcoxauc()

Fast Wilcoxon rank sum test and auROC

y

Group labels for observations in gene expression matrix