Pseudobulk one versus all — pseudobulk_one_vs_all • presto

Pseudobulk one versus all

pseudobulk_one_vs_all(
  dge_formula,
  counts_df,
  meta_data,
  contrast_var,
  vals_test,
  collapse_background,
  verbose
)

Arguments

dge_formula: differential gene expression formula for DESeq2
counts_df: counts matrix
meta_data: data.frame of cell metadata
contrast_var: cell metadata column to use for differential gene expression
vals_test: cell metadata columns
collapse_background: collapse background counts according to `contrast_var`
verbose: verbose