Pseudobulk within

Pseudobulk within

pseudobulk_within(
  dge_formula,
  counts_df,
  meta_data,
  split_var,
  vals_test,
  verbose,
  min_counts_per_sample,
  present_in_min_samples
)

Arguments

dge_formula

differential gene expression formula for DESeq2

counts_df

counts matrix

meta_data

data.frame of cell metadata

split_var

-

vals_test

cell metadata columns

verbose

verbose

min_counts_per_sample

minimum counts per sample to include in differential gene expression

present_in_min_samples

minimum samples with gene counts to include in differential gene expression