Pseudobulk pairwise

pseudobulk_pairwise(
  dge_formula,
  counts_df,
  meta_data,
  contrast_var,
  vals_test,
  verbose,
  min_counts_per_sample,
  present_in_min_samples
)

Arguments

dge_formula: differential gene expression formula for DESeq2
counts_df: counts matrix
meta_data: data.frame of cell metadata
contrast_var: cell metadata column to use for differential gene expression
vals_test: cell metadata columns
verbose: verbose
min_counts_per_sample: minimum counts per sample to include in differential gene expression
present_in_min_samples: minimum samples with gene counts to include in differential gene expression